Showing posts with label medicine. Show all posts
Showing posts with label medicine. Show all posts

July 01, 2008

Breakthrough diagnosis for drug resistant Tuberculosis which kills 1.5 million per year

"We are capable now of making a diagnosis of MDR-TB within hours," Mario Raviglione, director of the WHO's Stop TB department said. He used the acronym for multi-drug resistant tuberculosis, an infection that cannot be cured with a standard course of antibiotics. The The DNA tests cost an avearge of $5 per test, and training is rather simple.

This is part of a wave of arriving or soon to arrive cheap and effective diagnostics and biomarker tests which help reduce the death rate from cancer and other diseases. There have been several advancements on better diagnosis tools including $10 USB stick testing labs on a chip.

TB affects the lungs and can be transmitted by an infected person in droplets through coughing, sneezing, singing and other activities. The disease infected 9.2 million people in 2006, turning it into the world’s second-most-fatal infectious disease after AIDS. So in recent days we have the announcement of major breakthroughs against the number 1 infectious disease AIDS (Zinc fingers for personal immune system boost to keep control of the Hiv virus levels) and now this test for the number 2 infectious disease MDR-TB.

The molecular test developed by Hain Lifescience and Innogenetics (INNX.BR) represented a big breakthrough in the fight against tuberculosis, a contagious respiratory ailment that kills 1.5 million people a year.

The new test can determine directly from a patient's saliva whether the tuberculosis bacteria can be treated with the two main antibiotics, isoniazid and rifampicin, making it easier to prescribe the drug to cure the disease and prevent its spread.



Drug-resistant tuberculosis strains are particularly lethal for HIV/AIDS sufferers and those with weak immune systems. Errors in prescribing antibiotics can worsen drug resistance problems and lead to XDR-TB, an untreatable form that has emerged in 49 countries including the United States, France, Russia, South Africa, Brazil and Australia.

The Germany-based Hain Lifescience is also working on a test to diagnose XDR, which remains in an experimental stage, a WHO spokesman said.

Lesotho will be the first country to get the lab equipment and training to use the new diagnostics under a programme supported by the WHO's partners UNITAID and the Foundation for Innovative New Diagnostics, Raviglione told a news briefing.

The other countries due to receive support to use the new test in the next four years are: Azerbaijan, Bangladesh, Cote d'Ivoire, the Democratic Republic of Congo, Ethiopia, Georgia, Indonesia, Kazakhstan, Kyrgyzstan, Lesotho, Moldova, Myanmar, Tajikistan, Ukraine, Uzbekistan, and Vietnam.

The WHO said this deployment, as well as efforts to make second-line antibiotics more affordable, should increase to 15 percent the proportion of patients with multi-drug resistant tuberculosis who are diagnosed and treated appropriately. At present, that rate is only 2 percent. So the 13% increase would mean about 195,000 lives saved each year. A global tuberculosis case finding and treatment program would cost in the range of $1 billion and is the 13th item on a cost benefit analysis by the Copenhagen consensus.

An expert panel of 8 economists, including 5 Nobel Laureates, ranked a list of the most promising solutions to ten of the most pressing challenges facing the world today in May 2008 in Copenhagen.

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June 30, 2008

Participated in a podcast on the Speculist about the Future of Fit and Fat

Sunday night Phil Bowermaster and Stephen Gordon hosted a panel on The Future of of Fit (and Fat). The panelists were PJ Manney, Brian Wang, and fitness expert and entrepreneur Shawn Phillips.

Shawn Phillips is an author, entrepreneur, and expert in the area of performance training and nutrition. He created the Full Strength® Premium Nutrition Shake, clinically proven to swap body fat for lean muscle. He is the author of ABSolution: The Practical Guide to Building Your Best Abs and has just released Strength for Life, published by Ballantine/Random House.

PJ Manney is a writer and futurist and a leading voice in the H+ movement. She has written extensively on transhumanism and related topics, as well as for television (Xena Warrior Princess and Hercules the Legendary Journeys) , and has a novel under development. PJ is the Chairman of the board of directors of the World Transhumanist Association, she's a senior associate at the Foresight Nanotech Institute, and she is on the scientific advisory board for the Lifeboat Foundation.

Brian L. Wang, M.B.A. is the Director of Research for the Lifeboat Foundation. Brian is a long time futurist who has been involved with nanotechnology associations since 1994. He is now a member of the Center for Responsible Nanotechnology (CRN) Task Force where he moderates the technology sub-task force. He is also on the Nanoethics Group Advisory Board. He is also the mastermind behind Next Big Future.


Check out the notes on the podcast and the podcast itself over at the Speculist.

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Electrostatic-based DNA Microarray Technique Could Revolutionize Medical Diagnostics


A team of researchers with the U.S. Department of Energy's Lawrence Berkeley National Laboratory (Berkeley Lab) has invented a technique in which DNA or RNA assays — the key to genetic profiling and disease detection — can be read and evaluated without the need of elaborate chemical labeling or sophisticated instrumentation.

Based on electrostatic repulsion — in which objects with the same electrical charge repel one another — the technique is relatively simple and inexpensive to implement, and can be carried out in a matter of minutes.

"One of the most amazing things about our electrostatic detection method is that it requires nothing more than the naked eye to read out results that currently require chemical labeling and confocal laser scanners," said Jay Groves, a chemist with joint appointments at Berkeley Lab's Physical Biosciences Division and the Chemistry Department of the University of California (UC) at Berkeley, who led this research. "We believe this technique could revolutionize the use of DNA microarrays for both research and diagnostics."

Groves, who is also a Howard Hughes Medical Institute (HHMI) investigator, and members of his research group Nathan Clack and Khalid Salaita, have published a paper on their technique in the journal Nature Biotechnology, which is now available online. The paper is entitled "Electrostatic readout of DNA microarrays with charged microspheres."

In their paper, Groves, Clack, and Salaita describe how dispersing a fluid containing thousands of electrically-charged microscopic beads or spheres made of silica (glass) across the surface of a DNA microarray and then observing the Brownian motion of the spheres provides measurements of the electrical charges of the DNA molecules. These measurements can in turn be used to interrogate millions of DNA sequences at a time. What's more, these measurements can be observed and recorded with a simple hand-held imaging device — even a cell phone camera will do.

"The assumption has been that no detection technique could be more sensitive than fluorescent labeling, but this is completely untrue, as our results have plainly demonstrated," said Groves. "We've shown that changes in surface charge density as a result of specific DNA hybridization can be detected and quantified with 50-picometer sensitivity, single base-pair mismatch selectivity, and in the presence of complex backgrounds. Furthermore, our electrostatic detection technique should render DNA and RNA microarrays sufficiently cost effective for broad world-health applications, as well as research."



FURTHER READING
Nature biotechnology paper: Electrostatic readout of DNA microarrays with charged microspheres

DNA microarrays are used for gene-expression profiling, single-nucleotide polymorphism detection and disease diagnosis1, 2, 3. A persistent challenge in this area is the lack of microarray screening technology suitable for integration into routine clinical care4, 5. Here, we describe a method for sensitive and label-free electrostatic readout of DNA or RNA hybridization on microarrays. The electrostatic properties of the microarray are measured from the position and motion of charged microspheres randomly dispersed over the surface. We demonstrate nondestructive electrostatic imaging with 10-m lateral resolution over centimeter-length scales, which is four-orders of magnitude larger than that achievable with conventional scanning electrostatic force microscopy. Changes in surface charge density as a result of specific hybridization can be detected and quantified with 50-pM sensitivity, single base-pair mismatch selectivity and in the presence of complex background. Because the naked eye is sufficient to read out hybridization, this approach may facilitate broad application of multiplexed assays

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June 29, 2008

LIFT cancer clinical trials

Human trials starting for Zheng Cui's LIFT 'cancer cure' H/T to Alfin

For the upcoming study, the researchers are currently recruiting 500 local potential donors who are 50 years old or younger and in good health to have their blood tested. Of those, 100 volunteers with high cancer-killing activity will be asked to donate white blood cells for the study. Cell recipients will include 22 cancer patients who have solid tumors that either didn't respond originally, or no longer respond, to conventional therapies. The study will cost $100,000 per patient receiving therapy, and for many patients (those living in 22 states, including North Carolina) the costs may be covered by their insurance company. There is no cost to donate blood.


The LIFT method and signing up for the trials The procedure was previously called GIFT.

LIFT is an investigational new cancer treatment that will transfer naturally-occurring cancer-killing activity (CKA) in the granulocytes of a selected donor into the body of a cancer patient.

Here's how the LIFT method works:

* Donor selection: Healthy young volunteers will be screened for the level of CKA, blood types, HLA types, infectious disease status, CMV status etc. by blood tests and physical examinations. The selected volunteers will become part of the Donor Registry. The test results of selected volunteers will be used to match with specific patients.

* Granulocyte collection: When a qualified patient is identified for treatment, granulocytes from several matched donors in the donor registry will be mobilized by two medications and collected by a well-established medical procedure called "apheresis" or "pheresis." A pheresis machine separates donor granulocytes from other blood products that will be immediately returned to donors so that the health impact on granulocyte donation is much smaller than on whole blood donation. Granulocyte mobilization and collection by apheresis have been used in clinical practices for a long time with very good safety record.

* Patient selection and granulocyte infusion: Qualified patients will be selected according to general health condition, disease status and match criteria. Freshly collected granulocytes from matched donors will be given to patients via IV infusion. Granulocytes cannot be stored or shipped for later uses.


Granulocyte infusion therapy has been traditionally used for treating neutropenia-related infections for over 30 years with excellent safety records. Since a significantly higher dose of granulocytes for each patient is proposed in our new cancer treatment, the primary goal of this clinical trial is to test whether the recipients can tolerate the proposed dose of granulocytes.

The main focus of the trial is the possibility of developing Transfusion-Associated Graft vs Host Diseases (TA-GVHD) and other potential side effects in the study subjects at higher doses of donor granulocyte.

Donor granulocytes per se are not known to produce TA-GVHD. However, granulocytes collected via apheresis may contain with some donor T-lymphocytes that in some rare occasions can produce various degrees of TA-GVHD in some individuals, especially the recipients with immune suppression. If possible, we will also make observations on the efficacy of this treatment on the study subjects with measurable diseases of cancer. We will recruit 22 cancer patients as study subjects for this trial.

FURTHER READING
More at redorbit

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June 27, 2008

UCLA Sens anti-aging conference abstracts

There will be about thirty speakers at the Understanding aging conference in UCLA this weekend

Here are links to the abstracts of the presentations and some of the highlighted presentations.

Zheng Cui will discuss his Natural Cancer Resistance in Mice and in Humans: basis for a novel cancer therapy (GIFT therapy was covered here) and if successful would be a significant advance in reducing cancer deaths. [possibly a high cure rate and preventing many cancers by helping people fight off early stage cancer]



A new clinical trial is underway at Wake Forest University to test this novel cancer therapy, termed "Leukocyte Infusion Therapy" or LIFT. This clinical trial has met all regulatory requirements including approval by the Wake Forest University School of Medicine's Institutional Review Board (IRB) and been granted an IND (Investigational New Drug) status by the Food and Drug Administration (FDA).


B.N. Ames talks about delaying the Degenerative Diseases of Aging

I [B.N. Ames] propose that during evolution micronutrient shortages were very common, e.g. the 15 essential minerals, which are not distributed evenly on the earth. The consequences of this homeostatic response are, for example, DNA damage (future cancer), adaptive immune dysfunction (future severe infection), and mitochondrial decay (future cognitive dysfunction and accelerated aging). Much evidence supports this idea that micronutrient shortages accelerate aging.


S.F. Badylak of the McGowan Institute for Regenerative Medicine, Pittsburgh, PA will be talking about Regenerative Medicine and Aging

Regenerative medicine is typically based upon the strategic use of undifferentiated stem and progenitor cells, inductive bioscaffolds, and appropriate micro-environmental cues that signal the need for tissue reconstruction. In many respects, the desired result is the recapitulation of developmental biology but limited to a specific tissue or organ. There are many fundamental questions yet to be answered with regard to implementation of such strategies in an aging population. Do aging cells have the same potential for regeneration as young cells? Are biologic scaffolds composed of extracellular matrix from fetal tissues more "instructive" than biologic scaffolds harvested from adult extracellular matrix? How does the micro-environment of aged tissues and organs differ from that or neonatal tissues and organs? These and other questions will be discussed.


Aging: the Disease, the Cure, the Implications

L.A. Briggs will discuss the struggle to keep telomeres long

The purpose of this presentation will be to review the current progress [to keep telomeres long], including the recent discovery of several small molecules that induce telomerase activity in normal human cells.

J. Campisi will discuss New tricks for dealing with old cells?

Some senescent cells can escape immune killing by secreting very high levels of matrix metalloproteinases (MMPs). These enzymes likely destroy the ligand-receptor interactions that are needed for killing by natural killer cells. Moreover, the killing of senescent cells can be greatly enhanced by MMP inhibitors, which therefore hold promise for improving the clearance of senescent cells from aged or diseased tissues. We also find that the senescence-associated secretion of inflammatory cytokines is dependent on continuous DNA damage signaling, particularly signaling initiated by the ATM protein kinase. Ablation of ATM kinase activity by RNA interference markedly reduces inflammatory cytokine secretion, suggesting that ATM inhibition might also hold promise for reducing local inflammation caused by senescent cells


C. Gravekamp is working on an improvement of cancer vaccination for older people

K.E. Healy is presenting Synthetic Environments to control Human Embryonic Stem Cell Self-Renewal and Fate Determination

Larocca is presenting Targeted Nanoparticle Probes for Identifying, Tracking and Isolating Embryonic Stem Cell Derived Progenitor Cells

C. Leeuwenburgh will be presenting Mitochondrial iron accumulation with age and functional consequences

D.A. Taylor will be presenting three-fold cell-based approaches to cardiovascular repair and answering the question Is Aging a Treatable Disease in the 21st Century?

FURTHER READING
Over twenty poster abstracts

The agenda of the conference with links to abstracts.

Pre-coverage of the conference

and coverage of Wired article on the conference

The new SENS projects AmyloSENS, ApoptoSENS, Glycosens, Oncosens and Replenisens

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June 26, 2008

Wired Magazine has positive SENS coverage

Wired magazine has a positive article on Strategies for Engineered Negligible Senescence (SENS) and Aubrey deGrey

Digg that article here

Other researchers have also found some success pursuing similarly structured research programs. For example, late last year, the Buck Institute for Age Research received $25 million from the National Institutes of Health to establish a home for the "new scientific discipline of geroscience." The new field, and its research institute, are dedicated to proactively fighting aging with researchers from a dizzying array of fields.

In research that will first be presented on Friday at the conference, Methuselah-funded scientists will demonstrate a proof-of-concept experiment for using bacterial enzymes to fight atherosclerosis, or the hardening of the arteries. That's an idea that de Grey has been pushing for years.


Gandhi describing his critics,
1. they ignore you
2. then they laugh at you
3. then they fight you
4. then you win

The Fourth Stage of SENS and Aubrey deGrey

"In perhaps seven or eight years, we'll be able to take mice already in middle age and treble their lifespan just by giving them a whole bunch of therapies that rejuvenate them," de Grey said. "Gerontologists all over, even my most strident critics, will say yes, Aubrey de Grey is right."

Even as he imagines completing Gandhi's fourth step, de Grey always keeps his eye on the ultimate prize -- the day when the aging-as-disease meme reaches the tipping point necessary to funnel really big money into the field.

"The following day, Oprah Winfrey will be saying, aging is a disease and let's fix it right now," de Grey said.

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June 16, 2008

If Tiger Woods has a Cartilage Tear in his Knee


From Yahoo Sports: The surgery on meniscus in Tiger Wood's left knee in April didn’t work as well as hope. One knee expert, while obviously not privy to the medical records, watched Woods this weekend and saw trouble.

This is not a story related to a "big future", but it is science and medicine related and could have big cultural impact if Tiger Woods has lasting health problems effecting his career.

UPDATE: Tiger Woods will have season ending ACL surgery on his knee Tiger Woods apparently has a double stress fracture in his tibia and a knee that will require reconstructive ACL surgery.

Step by Step ACL reconstruction

Key steps

4. To reconstruct the ACL, it is necessary to remove all of the existing damaged ACL. This is done with a motorized device which is called a shaver.


The graft harvest.

7. After making the skin incisions, the patella tendon is identified, and the central third is harvested with a bone block at each end of the tendon. Initially, the tendon is removed from the tibial tubercle area. The graft is then passed beneath the skin and retrieved from the superior incision. Harvesting is completed.

16. The graft is then placed through the tibia, through the knee joint, and into the femoral drill hole.

17/18. Screws are placed into the bones to hold the graft in place.
Although a number of different types of tissue have been utilized to reconstruct the ACL, the most common type of ACL reconstruction involves harvesting the central third of the patellar tendon with a bone block at each end of the tendon graft. After performing a diagnostic arthroscopic examination of the knee, the central third of the patellar tendon is harvested. The remaining tendon is then repaired. After harvesting the tissue, drill guides are used to place holes into the tibia (bone below the knee) and femur (bone above the knee). By placing the drill holes at the attachment sites of the original ligament, when the graft is pulled through the drill hole and into the knee, it will be placed in the same position as the original ACL. Typically, it takes the reconstructed ligament approximately 9 months to heal.


Future Technology

Researchers have used carbon nanotubes and electricity to coax the growth of stronger, bone-cushioning cartilage.

Researchers report in the Journal of Biomedical Materials Research Part A that they successfully grew cartilage around carbon nanotubes in their lab—and are optimistic that one day they will be able to duplicate the feat inside the human body. They may get a step closer in September, when they plan to implant carbon nanotubes in sheep joints to test—for the first time—their technique outside the lab. Researchers say they hastened new cell production by sending electrical surges through the nanotubes, which are also excellent conductors of electricity.

Webster has come a long way since his original experiments with in vitro bone tissue growth. Over the past decade, he added bladder, cartilage, central nervous system, and vascular tissue growth to his repertoire. The principle is the same in each: Growing cells are more likely to adhere to and thrive on a rough nanotube surface than on smooth bone or fraying cartilage.

"The use of nanotechnology in scaffolds to assist with regenerating cartilage is novel," says Constance Chu, director of the University of Pittsburgh Medical Center's Cartilage Restoration Program and an orthopedic surgeon specializing in cartilage regeneration and osteoarthritis, "and would be of high interest if it can eventually improve the functional properties of the regenerated cartilage."



CARBON NANOTUBE REINFORCED CARTILAGE: A cartilage-forming cell (known as a chondrocyte) interacts with carbon nanotube fibers in this image. The researchers' goal is to grow carbon nanotube-reinforced cartilage in the body that is stronger than the torn or worn cartilage it is replacing.
Courtesy of Brown University

Back to Tiger's Potential Problem
“Just so we’re clear, I have not seen Tiger’s operative reports, and I am not saying he’s done,” said Dr. Howard Luks, an orthopedic surgeon in Westchester, N.Y. who specializes in athletes. “But one has to imagine, with the amount of discomfort he’s experiencing this long after the surgery, that there are some degenerative symptoms or arthritic symptoms, or something that doesn’t respond well to pivoting, turning, and twisting.


Woods is having problems, which suggests the more serious and more difficult to treat hyaline cartilage problem, according to Luks.

There are two kinds of treatment for a cartilage tear

The most common procedure with pro athletes is called a menisectomy, which means we take out that portion of the meniscus that's torn. When you read in the newspaper that a player's meniscus has been repaired, most of the time that's not correct. It usually means that a portion of the meniscus was removed so that the knee would be functionally normal, but not anatomically normal.

Some of these tears can be repaired. The good part of the repair is that it extends the longevity of the knee's healthy function. The bad part is that it will take the player out of action for six months minimum. The blood supply to the meniscus is present throughout the outer 25 percent of it. Any tear that is in the substance of the meniscus and isn't located near the connection to the soft tissue won't heal because there's no blood supply to it.


The ongoing symtpoms include pain along the side of the knee where the meniscus is torn when he twists or flexes his knee or when there's a combination of flexing and twisting. He might have instability as well in which a piece of cartilage actually moves in the joint and gives him the feeling that his knee is going to give.

Long Term: You put the articular cartilage at risk when there's a deficit of meniscus cartilage. When the articular cartilage wears out, that's what we commonly call arthritis. When you take out meniscus, you put more load on the articular cartilage, which is more likely to wear out. But there are a lot of variables that make it hard to predict when the knee will become arthritic.

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June 03, 2008

Update on GIFT cancer treatment

Knowledge of Health provides a review of cancer treatment that is leading up to human clinical trial in the summer 2008 where cancer-killing granulocytes obtained from humans who exhibit high immunity against cancer will be injected into cancer patients. The review is selective and the author believes that vitamin D would also help with some cancer treatment.

This is an update to a prior report on the "GIFT" cancer treatment and cancer resistant mice.


Dr Cui took blood samples from 100 volunteers, and mixed just their granulocytes with cervical cancer cells in the laboratory. He found that one sample appeared to kill 97% of the cancer cells in just two days, while at the other end of the scale, after 48 hours, one sample had destroyed just 2% of the cancer cells.



[from wikipedia] Granulocytes are a category of white blood cells characterised by the presence of granules in their cytoplasm. They are also called polymorphonuclear leukocytes (PMN or PML) because of the varying shapes of the nucleus, which is usually lobed into three segments. In common parlance, the term polymorphonuclear leukocyte often refers specifically to neutrophil granulocytes, the most abundant of the granulocytes.


Online search of Wake forest cancer clinical trials

Online search of all cancer related clinical trials in the United States

FURTHER READING
Zheng Cui, MD PhD webpage at Wake Forest University

The granulocyte therapy work is described at the Wake Forest pages.

Wake Forest Cancer center

Clinical trials at Wake Forest in general

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June 02, 2008

Calorie Restriction mimicking Longevity drug could be available in 5 years

Sirtris' resveratrol formulation is now in Phase II clinical trials for diabetes. When it hits the market in four or five hears, David Sinclair [co-founder of Sirtris Pharmaceuticals, discovered the molecule resveratrol. Sirtis Pharmaceuticals was bought by GlaxoSmithKline for $720 million] said, "It'll be on the market as a diabetes drug. It'll have to sell for $3 or $4 a pill, in order to stay competitive." The company is also working with other molecules -- potential drugs -- that are unrelated to resveratrol but also stimulate the SIRT1 gene. Some of the molecules could be up to 1,000 times more potent than resveratrol, he added.

Assuming 2 pills per day, $2190-2920/year, $182-243/month.

He continued, "And once it goes off-patent [about 17 years from the time the patent is in force], companies will be able to make it for pennies. It'll be like aspirin."

Estimates of life extension from calorie restriction are 3 to 13 years.

Okinawans, the longest lived people on earth, consume 40% fewer calories than the Americans and live 4 years longer. Women in United States consume 25% fewer calories than men and live 5 years longer. From the survival studies of overweight and obese people it is estimated that long-term CR to prevent excessive weight gain could add only 3 to 13 years to life expectancy. Thus the effects of CR on human life extension are probably much smaller than those achieved by medical and public health interventions, which have extended life by about 30 years in developed countries in the 20th century, by greatly reducing deaths from infections, accidents and cardiovascular disease.


FURTHER READING
SRT501 given twice daily to Type 2 Diabetic patients, found that the patient group receiving 2.5 grams twice a day had significantly lower blood glucose levels as determined through an oral glucose tolerance test (OGTT) at the test's two-hour time point, as compared with the placebo group.

Sirtris has also identified new chemical entities (NCEs) that are chemically distinct from resveratrol, and in in-vitro tests are up to 1,000 times more potent. In preclinical models of Type 2 Diabetes, Sirtris' NCEs have lowered glucose and improved sensitivity.

A discussion of aging was a closing event of the first World Science Festival. Hat tip to instapundit and welcome to instapundit readers.

Sinclair says the best current anti-aging treatment is to exercise.

There is a promising cancer treatment going into clinical trials this summer.

Early cancer detection would also have a large impact

A recent University of Madison study suggests that lower doses of resveratrol can provide calorie restriction type benefits. Previous studies had shown life extending benefits only from very high doses of resveratrol.

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May 25, 2008

Polymer containers could deliver enzymes to human cells

New Scientist reports on 200 nanometer polymer spheres that can get placed into living cells Nextbigfuture assumes that they could change the size to bigger to place larger amounts of material into cells. Human cells are about 20 microns across. Mitocondria are 1–10 micrometers across.

Aubrey de Grey has indicated :
if this works in vivo. It could certainly be used to deliver the microbial enzymes [of the SENS plan]. The SENS projects are working to identify what will break down indigestible junk inside cells which cause atherosclerosis and other diseases.

Lysosens project: identification of microbial enzymes capable of removing the recalcitrant wastes of damaged cellular components that our cells can’t break down and recycle on their own (cellular “junk”), and delivering these enzymes to the cellular “incinerator” (the lysosome).

So the polymer containers could be used to deliver identified enzymes to the cell.

The Mitichondria (Mitosens) project is making progress and there is alternative work from mainstream sources. The Sirtris molecule is 1,000 times more potent than resveratrol, and could lead to solutions for diseases of aging including cancer and diabetes, according to an article published in the journal Nature. Calorie restriction may operate via improving mitochondria function.

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May 23, 2008

Breakthrough in Waferscale self-assembly of nanostructures

Researchers at Northeastern University have developed a technique to scale-up the directed assembly of single-walled carbon nanotube (SWNT) networks, from microns to inches, creating a viable circuit template that can be transferred from one substrate to another for optimum productivity. The revolutionary assembly process has the potential to change the way electronics and other applications are developed for consumers.

The CHN (Center for High-rate Nanomanufacturing at Northeastern University) has been able to develop a novel way to assemble nanoelements (nanotubes, nanoparticles, etc.) into nanostructures and devices that enable the mass production of atomic-scale structures and will lead to the production of devices such as biosensors, batteries, memory devices and flexible electronics very quickly and efficiently and with minimal errors.

The revolutionary assembly process, developed by Busnaina and his team, scales-up the nanoscale structures on a wafer level on a variety of hard and soft substrates such as silicon and polymers. In addition, the assembled structures could also be transferred to other substrates in continuous or batch processes.

Concurrently, researchers at the CHN are investigating the environmental and biological implications to ensure that these devices and techniques are safe for people and for the environment.



FURTHER READING
Research at CHN

1 & 2: Nanotemplate-enabled High Rate Manufacturing
Once developed, CHN’s nanotemplates will be integrated as tooling for an economically realistic production process. The nano-building blocks will be guided to self-assemble over large areas in high-rate, scaleable, commercially viable processes such as injection molding and extrusion. CHN researchers have successfully assembled both carbon nanotubes and 50-nm polystyrene latex particles on gold microwires and nanowires.

3: Proof of concept : Memory Device and Biosensor
Use carbon nanotubes for electromechnical switches (working with Nantero). Second testbed is for biosensors for 8-10 minute detection of antibodies. Working with Triton Systems on the biosensors.

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May 21, 2008

Biomarkers for bloodtests and protein biomarkers for imaging for effective early stage cancer screening



Early detection saves lives as treatment is more effective. Also, it can be 100 times cheaper to treat early stage versus later stage cancer. The Canary Foundation goal is to deliver early detection tests for solid tumor cancers by 2015. Cancer treatment cost $89 billion in the U.S. in 2007. Over 1.4 million new cancer cases are expected in 2008 in the US alone. Less than 15% of research funding goes to early detection. Early detection has proven value: since 1950, there has been a 70 percent decline in cervical-cancer incidence and deaths in developed countries5 thanks to a simple screening test, the Pap test ($8 test). Effective early cancer tests could save over $50 billion per year in medical costs and 400,000 lives each year in the USA and 5 million lives around the world. 7 million people die from cancer each year worldwide.

Cancer researchers met at Stanford University to work toward a goal of developing a simple blood test to detect cancer.

The symposium by the Canary Foundation allowed doctors to share their research in developing a simple two-stage test for cancer. They're hoping to deliver an early detection test for solid tumor cancers by 2015, said Dr. Don Listwin, founder of the Canary Foundation.

The blood test, which would look for proteins given off by cancer cells, could detect the disease at its earliest stages, when treatment would be most effective.

Slide images and information is from the Canary Foundation presentation


A major investment in imaging is a key difference with Canary. As opposed to anatomical imaging, they strive to create probes that will home in on the cancer and light it up for the surgeon. Canary's goal is to deliver two‐stage tests for all solid tumors.



For the blood test, they need to combine multiple biomarkers to find ovarian cancer. So far, there aren’t single markers. Canary believes that combinations of three to five markers or “panels” will identify early cancer. They have a blood test that is quite promising at 0.960 in early stage cancer. So what is good enough? Well, if you cut someone open as the next step, then .96 isn’t near good enough. 4% wrong if you screen millions of woman is a disaster. But if you have a next stage imaging test to
confirm, deny or monitor, it is good enough. Without imaging, this test needs to be 0.999 and that will be very challenging if not impossible. Their focus is on new molecular imaging as opposed to anatomical imaging like X‐ray or mammography


They look for proteins that are specific to cancer that exist on the cell surface.
The scientists create probes that are specific to those cells and light them up.
Biomarkers for imaging are those type of proteins that stick on cell surface and for blood biomarkers it’s proteins that shed and circulate in the blood.

FURTHER READING
Nextbigfuture has been in favor of the aggressive research into biomarkers and the development of inexpensive tests for early disease detection.

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May 20, 2008

Gene therapy advance for safer, cheaper and more efficient procedure and Extinct Tiger gene revived

Replacing one amino acid on the surface of a virus that shepherds corrective genes into cells could be the breakthrough scientists have needed to make gene therapy 30 times more efficient. Gene therapy will be a more viable option for treating genetic diseases such as hemophilia. The discovery could be the solution to a problem that has plagued researchers and doctors using AAV as a gene therapy vector — how to administer enough of the gene-toting virus to yield a therapeutic benefit without triggering an attack from the body’s immune system.


A two-week-old mouse fetus expresses the DNA of the extinct Tasmanian Tiger by developing cartilage, shown in blue. So a hybrid of a mouse and and extinct animal.

This is the realization of many movies and TV shows: Jurassic Park, Manimal, Aliens IV, South Park, Island of Dr Moreau and many more

In separate news, DNA from an extinct Tasmanian Tiger has been resurrected in a live animal (mouse) for the first time. The genetic material, extracted from the extinct Tasmanian tiger, proved functional in mice.


In addition to being more efficient, the new version of AAV could also prove to be more economical, Srivastava said. Current gene therapy trials are expensive because scientists must administer so much of the vector containing the therapeutic gene to see results. Using the new vector, scientists could potentially scale back to using as little as 100 billion particles instead of 10 trillion, Srivastava said.

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May 19, 2008

New work on nanorobotics design, simulation and control for nanomedicine

A follow up to a group working on nanorobots for nanomedicine

The researchers have new papers: Nanorobot hardware architecture for Medical Defense

This work presents a new approach with details on the integrated platform and hardware architecture for nanorobots application in epidemic control, which should enable real time in vivo prognosis of biohazard infection. The recent developments in the field of nanoelectronics, with transducers progressively shrinking down to smaller sizes through nanotechnology and carbon nanotubes, are expected to result in innovative biomedical instrumentation possibilities, with new therapies and efficient diagnosis methodologies. The use of integrated systems, smart biosensors, and programmable nanodevices are advancing nanoelectronics, enabling the progressive research and development of molecular machines. It should provide high precision pervasive biomedical monitoring with real time data transmission.The use of nanobioelectronics as embedded systems is the natural pathway towards manufacturing methodology to achieve nanorobot applications out of laboratories sooner as possible. To demonstrate the practical application of medical nanorobotics, a 3D simulation based on clinical data addresses how to integrate communication with nanorobots using RFID, mobile phones, and satellites, applied to long distance ubiquitous surveillance and health monitoring for troops in conflict zones. Therefore, the current model can also be used to prevent and save a population against the case of some targeted epidemic disease.




They have a lot of papers and work at their site on nanorobotics design, control and 3d simulation



Current developments in nanoelectronics [Appenzeller, J.; Martel, R.; Derycke, V.; Rodasavljevic, M.; Wind, S.; Neumayer, D.; Avouris, P. Carbon nanotubes as potential building blocks for future nanoelectronics. Microelectron. Eng. 2002, 64 (1), 391–397.] and nanobiotechnology [Liu, J.-Q.; Shimohara, K. Molecular computation and evolutionary wetware: a cutting-edge technology for artificial life and nanobiotechnologies. IEEE Trans. Syst. Man Cybern. Part C- Appl. Rev. 2007, 37 (3), 325–336. ] are providing feasible development pathways to enable molecular machine manufacturing, including embedded and integrated devices, which can comprise the main sensing, actuation, data transmission, remote control uploading, and coupling power supply subsystems, addressing the basics for operation of medical nanorobots.
A recent actuator with biologically-based components has been proposed [Xiong, P.; Molnar, S.V.; Moerland, T.S., Hong, S.; Chase, P.B. Biomolecular-based actuator.
7014823US 2006, Mar. ]. This actuator has a mobile member that moves substantially linearly as a result of a biomolecular interaction between biologically-based components within the actuator. Such actuators can be utilized in nanoscale mechanical devices to pump fluids, open and close valves, or to provide translational movement. To help control nanorobot position, a system for tracking an object in space can comprise a transponder device connectable to the object. The transponder device has one or several transponder antennas through which a transponder circuit receives an RF (radio frequency) signal. The transponder device adds a known delay to the RF signal, thereby producing RF response for transmitting through the transponder antenna [Laroche, J.-L. RF system for tracking objects. 20060250300US 2006, Nov]. A series of several transmitters and antennas allow a position calculator, associated with the transmitters and receivers, to calculate the position of the object as a function of the known delay, and the time period between the emission of the RF signal and the reception of the RF response from the first, second and third antennas. Nanotechnology is moving fast towards nanoelectronics fabrication. Chemically assembled electronic nanotechnology provides an alternative to using complementary metal oxide semiconductor (CMOS) for constructing circuits with feature sizes in the tens of nanometers [. Goldstein, S.C.; Rosewater, D.L. Methods of chemically assembled electronic nanotechnology circuit fabrication. 7064000US 2006, Jun. ]. A CMOS component can be configured in a semiconductor substrate as part of the circuit assembly [Ramcke, T.; Rosner, W.; Risch, L. Circuit configuration having at least one nanoelectronic component and a method for fabricating the component. 6442042US 2002, Aug. ]. An insulating layer is configured on the semiconductor substrate, which covers the CMOS component. A nanoelectronic component can be configured above an insulating layer. If several nanoelectronic components are provided, they are preferably grouped in nanocircuit block.

This work used a 3D approach to show how nanorobots can effectively improve health care and medical defense. Nanorobots should enable innovative real time protection against pandemic outbreaks. The use of nanomechatronics techniques and computational nanotechnology can help in the process of transducers investigation and in defining strategies to integrate nanorobot capabilities. A better comprehension about the requirements a nanorobot should address, in order to be successfully used for in vivo instrumentation, is a key issue for the fast development of medical nanorobotics. Details on current advances on nanobioelectronics were used to highlight pathways to achieve nanorobots as an integrated molecular machine for nanomedicine. Moreover, based on achievements and trends in nanotechnology, new materials, photonics, and proteomics, a new investigation methodology, using clinical data, numerical analysis and 3D simulation, has provided a nanorobot hardware architecture with real time integrated platform for practical long distance medical monitoring. This model can enable nanorobots as innovative biohazard defense technology.

In the 3D simulation, the nanorobots were able to efficiently detect alpha-NAGA signals in the bloodstream, with the integrated system retrieving information about a person infected with influenza. The model provided details on design for manufacturability, major control interface requirements, and inside body biomolecular sensing for practical development and application of nanorobots in medical
prognosis.

The use of nanorobots for in vivo monitoring chemical parameters should significantly increase fast strategic decisions. Thus, nanorobot for medical defense means an effective way to avoid an aggressive pandemic disease to spread into an outbreak. As a direct impact, it should also help public health sectors to save lives and decrease high medical costs, enabling a real time quarantine action. An important and interesting aspect in the current development is the fact that, the similar architecture presented in terms of hardware and platform integration, can also be used to detect most types of biohazard contaminants.

FURTHER READING
Nanorobot hardware articles

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Aging 2008 at UCLA June 27-29, 2008

The Methuselah Foundation is having a major Aging conference at UCLA in Los Angeles June 27 through June 29, 2008 It is at Royce Hall in UCLA.

Aging: the Disease, the Cure, the Implications

The press release on the free June 27 event

What: Aging: The Disease, The Cure, The Implications, hosted by Methuselah Foundation
When: Friday, June 27, 2008, Drinks 4pm, Presentations 5pm, Dinner 8pm
Where: Royce Hall, 405 Hilgard Ave, Los Angeles, CA 90024
Who:
* Dr. Bruce Ames, Professor of Biochemistry and Molecular Biology at UC Berkeley
* G. Steven Burrill, Chairman of Pharmasset and Chairman of Campaign for Medical Research
* Dr. Aubrey de Grey, Chairman and CSO of Methuselah Foundation and author of Ending Aging
* Dr. William Haseltine, Chairman of Haseltine Global Health
* Daniel Perry, Executive Director of Alliance for Aging Research
* Bernard Siegel, Executive Director of Genetics Policy Institute
* Dr. Gregory Stock, Director of Program on Medicine, Technology & Society at UCLA School of Medicine
* Dr. Michael West, CEO of BioTime and Adjunct Professor of Bioengineering at UC Berkeley

The June 28, 29 Aging conference which costs $150-$995 depenging on if you are a student, how early you register and if you need a hotel room. So register early (before June 5, 2008) to save the most money.

FURTHER READING
Here are banners and videos for bloggers and others to use to promote the event

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May 17, 2008

Artificial cell created from scratch

Simple artificial cell created from scratch

A team of Penn State researchers has developed a simple artificial cell with which to investigate the organization and function of two of the most basic cell components: the cell membrane and the cytoplasm--the gelatinous fluid that surrounds the structures in living cells. The work could lead to the creation of new drugs that take advantage of properties of cell organization to prevent the development of diseases.



The model cell uses as the cytoplasm a solution of two different polymers, PEG and dextran (Panel A). The image in Panel B is the image in Panel A highlighted with fluorescent dyes. The blue region is PEG, which is concentrated in the outer polymer solution; the green area is the portion of the membrane that contains PEG groups, which interact with the contents of the cell; and the red area is the portion of the membrane with fewer PEG groups, which interact with the contents of the cell to a lesser extent. After exposure to a concentrated solution of sugar, the cell converted to a budded form (Panel C). A dextran-rich mixture filled the bud, while a PEG-rich mixture remained inside the body of the cell. Panel D shows the image in Panel C highlighted with fluorescent dyes. The blue area is the PEG-rich region. This new structure exhibits polarity both in the membrane and in the aqueous interior of the model cell. (Credit: Christine Keating, Penn State)

The team's next step is to create a cascade in polarity. "By creating a model cytoplasm with different compositions, we demonstrated that we can control the behavior of cell membranes," said Keating. "Now we want to find out what will happen if, for example, we add an enzyme whose activity depends on the compositions of the cytoplasm and cell membrane."

Although Keating and her colleagues plan to continue adding components to their model cell, they don't expect to make a real cell. "We aren't trying to generate life here. Rather, we want to understand the physical principles that govern biological systems," said Keating. "For me the big picture is trying to understand how the staggering complexity observed in biological systems might have arisen from seemingly simple chemical and physical principles."

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May 12, 2008

Accurate biochips for comprehensive disease screening


Biochips contain grids of small wells or "dots," each of which contains a protein, antibody or nucleic acid that can bind to a target antigen or DNA sequence.

New biochips can detect cancers and other diseases accurately before symptoms develop.

Why does this matter ? Early detection can have a large impact on survival rates. Breast cancer detected at stage 0 has a 100% survival rate after 5 years. Those who are detected at stage 4 have a 20% survival rate after 5 years. So if everyone had good and accurate and regular disease screening then no one would die of breast cancer even if treatments do not improve. We can already save everyone who has stage 0 breast cancer. This would save 502,000 lives worldwide every year.

Lung cancer five year survival rates
Stage 0 70-80%
Stage I 50%
Stage II 30%
Stage III 5-15%
Stage IV <2%

Detecting everyone at Stage 0 instead of later stages would reduce 1.3 million deaths per year from lung cancer by nearly 1 million people.

Stomach cancer has similar survival statistics as lung cancer

For liver cancer it drops from 30-60% for early detection down to less than 5%

The 2-D fractionation process creates 960 separate protein fractions, which are then arranged in a single biochip containing 96-well grids. Eprogen scientists then probe the microarrays with known serum or plasma "auto-antibodies" produced by the immune systems of cancer patients. By using cancer patients' own auto-antibodies as a diagnostic tool, doctors could potentially tailor treatments based on their personal autoantibody profile

Though the analysis of a sample on a biochip can take 30 minutes, scientists can have much more confidence in the accuracy of the diagnosis, according to Schabacker. "Biochips give us the ability to run a test that allows your doctor to figure out exactly what you're suffering from during the time that you're in his or her office," he said. By adding just a few more drops to the chip's array, Schabacker claimed, lab technicians could test for a whole slate of biotoxins and especially virulent diseases from the plague to smallpox to anthrax. Other infections, such as those caused by Multidrug-Resistant Tuberculosis (MDR-TB) and the often deadly Methicillin-resistant Staphylococcus aureus (MRSA), can be quickly diagnosed with biochips like Akonni's TruArray assay, according to Daitch.

"The unique advantage offered by the TruArray platform lies in the fact that we can screen a single sample for multiple viral and bacterial infections at the same time," said Charles Daitch, Akonni's president and CEO. "Soon, doctors will no longer need to order as many expensive and time-consuming tests, and can instead obtain accurate diagnoses that will enable them to quickly provide their patients w